English
Syahril Siregar, Ph.D. is a junior lecturer at Department of Physics, FMIPA University of Indonesia. He received S.Si. (Equivalent to B.Sc.) in 2012 from Department of Physics, University of Indonesia and master degree in 2015 from Department of Physics, Tohoku University, Japan. Both undergraduate and master theses were about theoretical and computational condensed matter physics.
He received his Ph.D. degree from Biomedical Imaging Laboratory, Graduate School of Biomedical Engineering, Tohoku University, Japan, in 2020 under supervision of Prof. Yoshifumi Saijo, M.D. His Ph.D. topic was about photoacoustic imaging contrast agent.
He has two post-doctoral positions experience. The first was at Computational Biology and Biological Physics (CBBP) Lund University Sweden where he developed open-source software (OCTAVVS) for FTIR microspectroscopy data processing and analysis. The second was at Technological University Dublin (TU Dublin) and was funded under the SFI Frontiers for the Future Programme. He was working with Dr. Aidan Meade to develop high-throughput analytical pipelines for imaging data towards clinical decision support.
His current research interest includes vibrational spectroscopy, multivariate statistics for spectroscopic imaging data, image analysis, application of artificial intelligence in biospectroscopy, and computational physics.
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Multivariate statistics to analyse large amount of spectroscopic imaging data.
Image analysis and Image reconstruction technique in broad medical imaging.
Signal and Image Processing.
Modeling and Computational Science.
Internet of Things (IoT).
Selected Publications
- Michiel Op De Beeck, Carl Troein, Syahril Siregar, Luigi Gentile, Giuseppe Abbondanza, Carsten Peterson, Per Persson, and Anders Tunlid. “Regulation of fungal decomposition at single-cell level.” The ISME Journal (2020): 1-10.
- Carl Troein, Syahril Siregar, Michiel Op De Beeck, Carsten Peterson, Anders Tunlid, and Per Persson. “OCTAVVS: A graphical toolbox for high-throughput preprocessing and analysis of vibrational spectroscopy imaging data.” bioRxiv (2019).
- Syahril Siregar, and Yoshifumi Saijo. “Photoacoustic Image Denoising Using Dictionary Learning.” In Proceedings of the 3rd International Conference on Biomedical Signal and Image Processing, pp. 34-37. 2018.
- Syahril Siregar, Sri Oktamuliani, and Yoshifumi Saijo. “A Theoretical Model of Laser Heating Carbon Nanotubes.” Nanomaterials 8, no. 8 (2018): 580.
- Syahril Siregar, Ryo Nagaoka, Israr Ul Haq, and Yoshifumi Saijo. “Non local means denoising in photoacoustic imaging.” Japanese Journal of Applied Physics 57, no. 7S1 (2018): 07LB06.
- Syahril Siregar, Ryo Nagoka, Kodai Ishikawa, and Yoshifumi Saijo. “Carbon nanotubes as potential candidate for photoacoustic imaging contrast agent.” In Proceedings of Meetings on Acoustics 6ICU, vol. 32, no. 1, p. 020018. Acoustical Society of America, 2017.
- Israr Ul Haq, Ryo Nagaoka, Syahril Siregar, and Yoshifumi Saijo. “Sparse-representation-based denoising of photoacoustic images.” Biomedical Physics & Engineering Express 3, no. 4 (2017): 045014.
- Israr Ul Haq, Syahril Siregar, Ryo Nagaoka, and Yoshifumi. Saijo. “Vascular bifurcation detection by symmetric analysis of eigenvalues.” (2017): 30-6.
- Riichiro Saito, Ahmad RT Nugraha, Eddwi H. Hasdeo, Syahril Siregar, Huaihong Guo, and Teng Yang. “Ultraviolet Raman spectroscopy of graphene and transition‐metal dichalcogenides.” physica status solidi (b) 252, no. 11 (2015): 2363-2374.
- Hsiang-Lin Liu, Syahril Siregar, Eddwi H. Hasdeo, Yasuaki Kumamoto, Chih-Chiang Shen, Chia-Chin Cheng, Lain-Jong Li, Riichiro Saito, and Satoshi Kawata. “Deep-ultraviolet Raman scattering studies of monolayer graphene thin films.” Carbon 81 (2015): 807-813.
- Muhammad Aziz Majidi, Syahril Siregar, and Andrivo Rusydi. “Theoretical study of optical conductivity of graphene with magnetic and nonmagnetic adatoms.” Physical Review B 90, no. 19 (2014): 195442.